from Reading in values, to validating input data, to instantiating object classes and making them a permanent part of the Brain object
from Reading in values, to validating input data, to instantiating object classes and making them a permanent part of the Brain object. This was made into a separate class as all of these routines and data are only used during the initialization process. So that what is permament gets saved in permanent data structures and what is not needed is deleted after initialization
alphabetic index hierarchy of classes
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