Connector

CONNECTMSG

To establish each connection, the destination cell must send four pieces of data to the FROM node: The ids of the FROM cell and cmp, the memory address of the Synapse's ReceiveMsg function on the TO node, and the time delay (in timesteps)

TMPCMP

This struct temporarily holds the information for each cell.

TMPCELL

Temporary container object to hold an array of temporary compartment information

MakeConnects

This function is used when the probability of connection stays constant (that is, it does not decay with distance).

AddToSendTo

After synapse connections are determined, the sending node (ie.

MakeConnects

This function is for connections that depend on distances.

distance

Find the x,y,z coordinates of a source and destination cell and calculate the distance between them.

gatherConnectedIDs

After connections have been made, the connected cell IDs (and compartment IDs) will be stored continuously into one array for quick reference

outputConnectMap

Output info about a single connection map.

MakeRecurrentConnects

For recurrent connections: When the original connection (cluster A to cluster B) is made, the reverse connections (cluster B to cluster A) are made at the same time.

swapInfo

For recurrent connections: This function allows for one Connection Descriptor to handle two different connections by exchanging information.

acceptRecurrentConnection

For recurrent connections: This function is called by the node B so that it may receive the secondary connection map created by node A.

createSynapses

For recurrent connections: general purpose synapse creator for when clusters are on one or two nodes.

sendRecurrentInfo

For recurrent connections: If the clusters were on different nodes, node A calls this function to inform node B about the connection scheme.

acceptDestinationInfo

For recurrent connections: If the clusters were on different nodes, node A calls this function to retrieve information about the synapses created on node B.

shuffleConnections

For recurrent connections: After a list (vector) of candidate connections have been created, they are shuffled so that they can be pulled iteratively from the list, while maintaining randomness.

shuffleConnections

For recurrent connections: After lists (vectors) of candidate connections have been created, they are shuffled so that they can be pulled iteratively from the list, while maintaining randomness.

transposeMap

For recurrent connections: after the maps have been coordinated, the second map must be trasposed so the source cells form the columns and destination cells form the rows

MakeSelfRecurrence

For a cell group recurrent with itself, all operations work within the same matrix.

CoordinateConnectionsOneWay

For recurrent connections: coordinate two connections maps to adjust the number of recurrent connections.

Functions for creating synapses between cells.

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