struct T_CONNECT

Information for connections betweens columns, layers, and cells.

LOCATOR L

General information about this object

char* fromColName

source column name

char* fromLayName

source layer name

char* fromCellName

source cell name

char* fromCmpName

source compartment name

char* toColName

destination column name

char* toLayName

destination layer name

char* toCellName

destination cell name

char* toCmpName

destination compartment name

char* SynName

synapse name to use for connection

int FromCol

index of source compartment; refers to appropriate T_COLUMN object

int FromLay

index of source layer; refers to appropriate T_LAYER object

int FromCell

index of source cell; refers to appropriate T_CELL object

int FromCmp

index of source compartment; refers to appropriate T_COMPARTMENT object

int ToCol

index of destination column; refers to appropriate T_COLUMN object

int ToLay

index of destination layer; refers to appropriate T_LAYER object

int ToCell

index of destination cell; refers to appropriate T_CELL object

int ToCmp

index of destination compartment; refers to appropriate T_COMPARTMENT object

int SynType

index of synapse to use for connection; refers to appropriate T_SYNAPSE object

double speed

speed of connection.

double Prob

probability of connection between the source and destination.

double step

When probability of connection should be modified by distance between the cells, this auxillary value is used in an exponential function to determine the decay of the probability as the distance grows

double delay[2]

Once all input data is read, a minimum and maximum expected delay can be computed.

double recurrentProbability[2]

This connection is responsible for ensuring that recurrent connections are made back to the source cell/cmp

struct T_CONNECT *recurrentConnection

for recurrent connections: pointer to the other connection, to access information

int disabled

When a recurrent connection is defined, it chooses one T_CONNECT object to use and disables the other

Documentation

Information for connections betweens columns, layers, and cells. The same structure is used to avoid duplication.

LOCATOR L

General information about this object

char* fromColName

source column name

char* fromLayName

source layer name

char* fromCellName

source cell name

char* fromCmpName

source compartment name

char* toColName

destination column name

char* toLayName

destination layer name

char* toCellName

destination cell name

char* toCmpName

destination compartment name

char* SynName

synapse name to use for connection

int FromCol

index of source compartment; refers to appropriate T_COLUMN object

int FromLay

index of source layer; refers to appropriate T_LAYER object

int FromCell

index of source cell; refers to appropriate T_CELL object

int FromCmp

index of source compartment; refers to appropriate T_COMPARTMENT object

int ToCol

index of destination column; refers to appropriate T_COLUMN object

int ToLay

index of destination layer; refers to appropriate T_LAYER object

int ToCell

index of destination cell; refers to appropriate T_CELL object

int ToCmp

index of destination compartment; refers to appropriate T_COMPARTMENT object

int SynType

index of synapse to use for connection; refers to appropriate T_SYNAPSE object

double speed

speed of connection. Expected units are millimeters per millisecond (mm/ms)

double Prob

probability of connection between the source and destination. Expects values from 0 through 1

double step

When probability of connection should be modified by distance between the cells, this auxillary value is used in an exponential function to determine the decay of the probability as the distance grows

double delay[2]

Once all input data is read, a minimum and maximum expected delay can be computed. - eliminate this

double recurrentProbability[2]

This connection is responsible for ensuring that recurrent connections are made back to the source cell/cmp

struct T_CONNECT *recurrentConnection

for recurrent connections: pointer to the other connection, to access information

int disabled

When a recurrent connection is defined, it chooses one T_CONNECT object to use and disables the other

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